rs30418341 SNP Detail

Summary

• ID
  rs30418341
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:9961524 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGCC TTGCAGTGGA GATCAGTAAC
  R
  TGTACCCTTT CCACTTTCAG TCTTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39689393	mCV23006764	ABI	CRAMUS_MOUSE	f	SNP	A	A	G					A		A
ss50605208	NES13645669	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	G	A	G		A	A	A	A	A	A	A	A
ss146039585	ENSMUSSNP5629956	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30418341					SNP	A	A	G	A	G	A	G	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50605208	NES13645669	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:9961524 () rs orientation: forward

Symbol	Name	Function Class
Best1	bestrophin 1	1014 bp downstream
Cpgi10595	CpG island 10595	775 bp distal
Fth1	ferritin heavy polypeptide 1	within coordinates
Gm36913	predicted gene, 36913	1640 bp upstream
Rr543964	regulatory region 543964	1653 bp distal
Rr543965	regulatory region 543965	1427 bp distal
Rr543966	regulatory region 543966	158 bp distal
Rr543967	regulatory region 543967	171 bp proximal
Tssr155003	transcription start site region 155003	1449 bp downstream
Tssr155004	transcription start site region 155004	1308 bp downstream
Tssr155005	transcription start site region 155005	1042 bp downstream
Tssr155006	transcription start site region 155006	18 bp upstream
Tssr155007	transcription start site region 155007	87 bp upstream
Tssr155008	transcription start site region 155008	397 bp upstream
Tssr155009	transcription start site region 155009	743 bp upstream
Tssr155010	transcription start site region 155010	933 bp upstream
Tssr158131	transcription start site region 158131	1725 bp upstream
Tssr158132	transcription start site region 158132	1711 bp upstream
Tssr158133	transcription start site region 158133	1654 bp upstream
Tssr158134	transcription start site region 158134	1629 bp upstream
Tssr158135	transcription start site region 158135	1593 bp upstream
Tssr158136	transcription start site region 158136	1220 bp upstream
Tssr158137	transcription start site region 158137	59 bp downstream
Tssr158138	transcription start site region 158138	105 bp downstream
Tssr158139	transcription start site region 158139	425 bp downstream
Tssr158140	transcription start site region 158140	646 bp downstream
Tssr158141	transcription start site region 158141	697 bp downstream
Tssr158142	transcription start site region 158142	713 bp downstream
Tssr158143	transcription start site region 158143	772 bp downstream
Tssr158144	transcription start site region 158144	929 bp downstream