rs30418441 SNP Detail

Summary

• ID
  rs30418441
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:9963771 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTAA CAGTGTTCTT GGTAGGGCTG
  K
  AGAGATGTGC CAACAGTCAA AGAGT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39689858	mCV23006775	ABI	CRAMUS_MOUSE	f	SNP	G	T	T
ss325719633	CHEV_19_10060897	CHEVERUD	SCREENING_POP	f	SNP				G	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30418441					SNP	G	T	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:9963771 () rs orientation: forward

Symbol	Name	Function Class
Best1	bestrophin 1	within coordinates
Fth1	ferritin heavy polypeptide 1	1309 bp downstream
Rr543967	regulatory region 543967	1825 bp distal
Rr543968	regulatory region 543968	890 bp proximal
Tssr155008	transcription start site region 155008	1824 bp downstream
Tssr155009	transcription start site region 155009	1478 bp downstream
Tssr155010	transcription start site region 155010	1290 bp downstream
Tssr158139	transcription start site region 158139	1788 bp upstream
Tssr158140	transcription start site region 158140	1567 bp upstream
Tssr158141	transcription start site region 158141	1539 bp upstream
Tssr158142	transcription start site region 158142	1514 bp upstream
Tssr158143	transcription start site region 158143	1448 bp upstream
Tssr158144	transcription start site region 158144	1310 bp upstream