rs30419332 SNP Detail

Summary

• ID
  rs30419332
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:46502851 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCAG TAGCCAGAGC TGTTCTGCCG
  Y
  GCCTTTCCCG CTGACTGACT GTCCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39682092	mCV22842045	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	C
ss146452633	ENSMUSSNP6993473	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C
ss325822659	CHEV_19_46588902	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30419332					SNP	T	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:46502851 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11005	CpG island 11005	601 bp proximal
Trim8	tripartite motif-containing 8	within coordinates
Tssr156776	transcription start site region 156776	204 bp upstream
Tssr156777	transcription start site region 156777	910 bp upstream
Tssr156778	transcription start site region 156778	1302 bp upstream
Tssr156779	transcription start site region 156779	1427 bp upstream
Tssr156780	transcription start site region 156780	1741 bp upstream
Tssr156781	transcription start site region 156781	1775 bp upstream
Tssr156782	transcription start site region 156782	1841 bp upstream