rs30419643 SNP Detail

Summary

• ID
  rs30419643
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:52117985 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTGATTTT GTTTTTCAAA
  AATTTACAAT CTCAGGCTGG TTGAATCCAA ACATTCGGAA CCCACAGGTA CAGAGGGAAA
  ACATTTTTGG GGGGTTGAGG GTGAAAGAAC CCCTAATTGT TGGTTACTGA GAGTAGTTAA
  TATTTTTTAC CATTATTATA TGTCTGTTAG ACAGTAGAAC TGCTTTGATA AGAACTTTTG
  Y
  TTTTTTTCTT TCATCTCAAC TTTACAGATA ATGAAATGCA GGTCCAGAGA GGGTTGAAGA
  TTTTCCCAGA TCACGCAGCT AGTAAATATC AGATAAGGAA TTTAAACAGA GGCAATTTTA
  TTCCAGAATC TTTCTGAGTA ATGCACTGTC ATTTAAGCCA AATTTTCTGT AGAAATGAAT
  ACACTAACAA TAGAGGAAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46946256	NES10945245	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30419643					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46946256	NES10945245	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:52117985 () rs orientation: forward

Symbol	Name	Function Class
DXMit23	DNA segment, Chr X, Massachusetts Institute of Technology 23	659 bp proximal
Rr7523	regulatory region 7523	471 bp proximal