rs30419846 SNP Detail

Summary

• ID
  rs30419846
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:10183125 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTT AAAATCCAGG TGTGGCCAGG
  Y
  GATGGTGGTG CATGACTTTA ATCCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss39690925	mCV23259621	ABI	CRAMUS_MOUSE	f	SNP	C		T	T
ss146041363	ENSMUSSNP1252809	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T	T
ss325720137	CHEV_19_10280251	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs30419846					SNP	C	C	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:10183125 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10601	CpG island 10601	1288 bp distal
Fen1	flap structure specific endonuclease 1	1592 bp upstream
Rr356596	regulatory region 356596	676 bp proximal
Rr361277	regulatory region 361277	1720 bp proximal
Rr362959	regulatory region 362959	324 bp distal
Rr405855	regulatory region 405855	1406 bp downstream
Tmem258	transmembrane protein 258	within coordinates
Tssr155037	transcription start site region 155037	1570 bp downstream
Tssr155038	transcription start site region 155038	1524 bp downstream
Tssr155039	transcription start site region 155039	1512 bp downstream
Tssr155040	transcription start site region 155040	699 bp upstream
Tssr158165	transcription start site region 158165	1891 bp upstream
Tssr158166	transcription start site region 158166	1813 bp upstream
Tssr158167	transcription start site region 158167	1348 bp upstream