rs30421405 SNP Detail

Summary

• ID
  rs30421405
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:52120795 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTGGGTGCT GTGGCGTGAT
  CACACTGGAA CACACACACA CACACCACTA CAACCAAACA ATGAATGAAT ACATAACATA
  AAAAGGAATC TTCAGGTTCT AACAAATTTT TCCTCGTAAT TCTCATATGG ATTTTTAAAG
  CCCTCTTCTG AGTCATCTCC CTCAGAATAC ATTAAACCTT TCCAGGTTTT GATAAGGCTG
  R
  AAGACTCGGA GACTCGGACG TGGGAAACAT CTAGGAATAC CTGCTGTGGT CTCTAGTGTT
  GAAAAAGTAA AGTTTTGTGC TTGTTGAGAG AAAAAAATAG AGATCACGGA GAAAGTTTTA
  GGTGGTCTTT TGGGTTTTTT TTTTTGGCAT TCTGGTTTTT TTAGGGGCTA GTGTAGCCTA
  GGATTGTCTC AAAAGCTTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46946268	NES10945183	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30421405					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46946268	NES10945183	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:52120795 () rs orientation: forward

Symbol	Name	Function Class
DXMit23	DNA segment, Chr X, Massachusetts Institute of Technology 23	1903 bp distal
Rr7523	regulatory region 7523	1915 bp distal