rs30421706 SNP Detail

Summary

• ID
  rs30421706
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:53669337 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTAGATCCC GTAAAATGCC
  TAATTTCTTT CAACTTGCAT AAATCATAGT CAAAAATCCG TTACTCTGCA ATCACACACA
  ATAGTGGCGT GCTTGTCATT TCGAGTCTAT TCTTCTCAGC AGGAGGAATG CGTTGTTCCC
  TTTTCTCCAT CACTCTAGGA CATAGAATTG TAGTCAATTG TACAAATCAA AGGAGGTCAC
  Y
  CTAAAGACCA CGGTTGGCCA GAAGGATATG GCCTCAGGCA ACCAGTGAAC CAAACAGAGT
  CAAGTCATGA CTAAAACAGG GGCCAAGGCT AACCAGGGCA CAGGGCTCTG ACTGTGAGCT
  CTAAGCAAGT TCCTGAGCAA AGGCCAGAGG TTGACCCTGC ATAGCCAACA CAATGTGGAC
  AAGATTAACA TGCCAGGAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46946636	NES10819820	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30421706					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46946636	NES10819820	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:53669337 () rs orientation: forward

Symbol	Name	Function Class
C820005J03Rik	RIKEN cDNA C820005J03 gene	within coordinates
Rr374977	regulatory region 374977	1965 bp upstream
Rr576748	regulatory region 576748	within coordinates