rs30421709 SNP Detail

Summary

• ID
  rs30421709
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:53669694 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCATAGCC AACACAATGT
  GGACAAGATT AACATGCCAG GAATGTTCAG CAGAACTGAC TCAGCTAGGA AAAGATACAA
  ACTGAGGAAA TATAAAAGCA TGTATCAAAA GTCCTCAACC GTTGCATATG GTGTTATGGG
  ATTTACGTGT AAATTATGGA TCGAGTCTGT TAGTTCATAG ACTTTTTATT GCCCACCCTG
  W
  GAGAGAGAAA AAAATAAGTA AGTACTCTTC TAACTGGATT CTGTAAGGAT GTGAGAAGCT
  CTTGAGAGAT TTCTTCTTCT TCTTCTTCTT TTTTTAAATT GGTTATTTTA TTTGTTTACA
  TTTCAAATGT TGTCCCACTT CCCAGTTTAC CCTCTGCAAA CCCCCTATCC CATCCCTTCC
  CCCTGCCTCT ATGAAGGTAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46946639	NES10819822	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30421709					SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46946639	NES10819822	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:53669694 () rs orientation: forward

Symbol	Name	Function Class
C820005J03Rik	RIKEN cDNA C820005J03 gene	within coordinates
Rr374977	regulatory region 374977	1608 bp upstream
Rr576748	regulatory region 576748	164 bp distal