rs30422511 SNP Detail

Summary

• ID
  rs30422511
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:53672144 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTAAGGCA GACCGGTCTG
  TTGTCTAGAC TTGCCCTTTC TTGTTTGTGC AGTCAGTTGG TAGATTTCCC GGATCTGGGG
  ATGCAGAGGT GGGCTCAGCA ATAGTAGCTT CTCTTCTCAC ATTCTTGCTC CCTGCAGAAG
  GAAGGCTAGC CTGGGCTTTG GCTTCACAGC AGTGAGGAGA TCCCAGTGAG AGTCAGTGGA
  R
  GCCAGCAGAG CCCTGTAAAT GCAGGGACTT ATACATGCTG CCTCTCTGGC ATTTAGAGGA
  AGCCAATGTG AACTTTATTT CCAATTCCCC TGAAAGAATT ACATTCCACC CTTTGACAGG
  AATATCTACC ATGTCACTGT GCAAAGGCAC ATCAACATAG ACGGGGATGT GATCTACCAC
  AGATGTCTCT AAGCTTGTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46946651	NES10819721	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30422511					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46946651	NES10819721	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:53672144 () rs orientation: forward

Symbol	Name	Function Class
C820005J03Rik	RIKEN cDNA C820005J03 gene	within coordinates
Rr374977	regulatory region 374977	within coordinates