rs30423004 SNP Detail

Summary

• ID
  rs30423004
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:97805795 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GGCCTGAGTA AGAATCAAAT AAGCCTTTAC CTTGGGATCT CAGACTGATT TCCAGTCTGT
  TCTTGAACCT AAAATGAAGA CAGCTTGAAA ACATGTAAGT GATTTTCCCA CCAGCTGATT
  CCTCTACGGG TGAAGAGAAA AGAGACCATG GAATTGACTC GATGCCTCTC TTCCAGAAGG
  TAATATCCAG ATGTTAACCA GAGCATAATA ACACATATGG TGACCAGGGA GTGTATCCTA
  GTTACTGCTT CTACTTGCGA GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTATGT
  R
  TGTGTGTGTG TTAGGACATC ATTATTTAAT ATTAGATTTT TTTTCTCTTG CTGCTCAGAA
  GTGACTGGAT CGCTAATGTT TGTTCAGAAA CGTTGAGTTC ACTTGCTTCA GTGACCACTC
  TTTGAAGTTT CTAGGGCTCA TTTGATCAGG TCTGGAGTGC GTACGCTTCC TTTCCCACTT
  TTTCTCATGT TATTTTTGGC ACTGCTGGTG TTGGAAGCTG GGGAAGTGAT TCACTGCAAA
  GTGAATTAAT TTTCCACGTT TTCTGATACG TTCCCCAGTC GCCCCCTGGT TCCTCTCCCC
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss45927784	mCV23115518	ABI	CRAMUS_MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs30423004					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:97805795 () rs orientation: forward

Symbol	Name	Function Class
Mitf	melanogenesis associated transcription factor	within coordinates
Tssr1945	transcription start site region 1945	1518 bp downstream
Tssr57866	transcription start site region 57866	1865 bp downstream
Tssr57867	transcription start site region 57867	1592 bp downstream
Tssr57868	transcription start site region 57868	1570 bp downstream
Tssr57869	transcription start site region 57869	1532 bp downstream
Tssr57870	transcription start site region 57870	1373 bp downstream
Tssr57871	transcription start site region 57871	1355 bp downstream
Tssr57872	transcription start site region 57872	585 bp downstream
Tssr57873	transcription start site region 57873	539 bp downstream
Tssr57874	transcription start site region 57874	522 bp downstream
Tssr57875	transcription start site region 57875	502 bp downstream
Tssr57876	transcription start site region 57876	472 bp downstream
Tssr57877	transcription start site region 57877	426 bp upstream
Tssr57878	transcription start site region 57878	470 bp upstream
Tssr57879	transcription start site region 57879	486 bp upstream
Tssr57880	transcription start site region 57880	539 bp upstream
Tssr57881	transcription start site region 57881	739 bp upstream
Tssr57882	transcription start site region 57882	837 bp upstream