rs30423294 SNP Detail

Summary

• ID
  rs30423294
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:53672170 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACTTGCCC TTTCTTGTTT
  GTGCAGTCAG TTGGTAGATT TCCCGGATCT GGGGATGCAG AGGTGGGCTC AGCAATAGTA
  GCTTCTCTTC TCACATTCTT GCTCCCTGCA GAAGGAAGGC TAGCCTGGGC TTTGGCTTCA
  CAGCAGTGAG GAGATCCCAG TGAGAGTCAG TGGAAGCCAG CAGAGCCCTG TAAATGCAGG
  R
  ACTTATACAT GCTGCCTCTC TGGCATTTAG AGGAAGCCAA TGTGAACTTT ATTTCCAATT
  CCCCTGAAAG AATTACATTC CACCCTTTGA CAGGAATATC TACCATGTCA CTGTGCAAAG
  GCACATCAAC ATAGACGGGG ATGTGATCTA CCACAGATGT CTCTAAGCTT GTTTTCGTGA
  GTTGCCTAAG AAGATATTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46946654	NES10819722	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30423294					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46946654	NES10819722	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:53672170 () rs orientation: forward

Symbol	Name	Function Class
C820005J03Rik	RIKEN cDNA C820005J03 gene	within coordinates
Rr374977	regulatory region 374977	within coordinates