rs30423426 SNP Detail

Summary

• ID
  rs30423426
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:153563298 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAAGGCCC ACAGCCCTGG
  GAAAGTCCCC TGCATATTTC TTCTTGAGGT TACTCAGGTA TGTCCGTAAC CTGTCTGGCT
  CCAACTGAGA GTTTCGGGCG GCCTGGACAA GCCTTGTGGC AAGATGGTAC ACAGCTCTCT
  GTCTATCCAT CTCAGGGGAA CTCCTTTGAT TTTGCTGTTA TCAAAATATG AAATTAAAAT
  K
  TAAATGCATA TTTAATTTAT ATTTTGGTAT TATTTTATCT TGTTTCATAG AAATAGGAAC
  TCAAGGTCTC ATACACACTT TAAAGCATGC TATCCTGGAG AATTAAATTT CTCATGAACA
  TTTACTACTT TATGAAAGTC TCATATCCTT GCAAATGACA TTTAAAGAAG AAATCCTGTT
  ACTCAGTCAA ATTTATAAAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45428987	mCV23503688	ABI	CRAMUS_MOUSE	f	SNP	G	T	T	T
ss136114479	ENSMUSSNP2561372	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30423426					SNP	G	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153563298 () rs orientation: forward

Symbol	Name	Function Class
Msh4	mutS homolog 4	within coordinates
Rr587780	regulatory region 587780	796 bp proximal