rs30424199 SNP Detail

Summary

• ID
  rs30424199
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:53672538 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGTTTTCG TGAGTTGCCT
  AAGAAGATAT TGGTTAGACC CACTAGGTTG CTTCCAAATA AGGAAATCAA TGGGGTCACA
  AATCCTGCAT TTTTAAAGCT AATGACAGTA TACGTAAGAC TAGGCTTGGA TCTCATAGAC
  CATTGAAACC ATTATTTGCA TTGGCAATCT TGATCAGGCA CCATATGCAC TGTGATTAGA
  R
  TGCAATGATG TCAGGGTTAG CCCAAAGCCA AATGCAGAGA GGACAATAAA TGAATGATGC
  TTCACACTGC CACTGCCTAG AAATAAAGAA ACTAAGAACC AAAGAAACAG CACATTTAAA
  AACCAGCTGC AAGCTGTCAA GCGTTTGAGA CCTTGAAATT CTCTCTTATT TGGTTCAAAA
  GAGCCCAAGT AACATATAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46946669	NES10819728	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30424199					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46946669	NES10819728	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:53672538 () rs orientation: forward

Symbol	Name	Function Class
C820005J03Rik	RIKEN cDNA C820005J03 gene	within coordinates
Rr374977	regulatory region 374977	within coordinates