rs30424642 SNP Detail

Summary

• ID
  rs30424642
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40367442 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGACT GCGTTGGGGA GCCGGCTTGG
  Y
  GCTGCAGGAG AGTGGAGGAC TGGAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46406413	mCV24918651	ABI	CRAMUS_MOUSE	f	SNP	C						T
ss50677582	NES14010803	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C	C	C	T	T	C	C	C	C	C	C
ss136330439	ENSMUSSNP162539	ENSEMBL	ENSEMBL_Sanger	f	SNP	C						T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30424642					SNP	C	T	C	C	C	C	T	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50677582	NES14010803	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40367442 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21594	CpG island 21594	within coordinates
Gramd1b	GRAM domain containing 1B	within coordinates
Rr676839	regulatory region 676839	721 bp distal
Rr676840	regulatory region 676840	within coordinates
Rr676841	regulatory region 676841	290 bp distal
Tssr84449	transcription start site region 84449	825 bp downstream
Tssr84450	transcription start site region 84450	236 bp downstream
Tssr84451	transcription start site region 84451	1509 bp upstream
Tssr84452	transcription start site region 84452	1537 bp upstream
Tssr88934	transcription start site region 88934	762 bp upstream
Tssr88935	transcription start site region 88935	711 bp upstream
Tssr88936	transcription start site region 88936	690 bp upstream
Tssr88937	transcription start site region 88937	626 bp upstream
Tssr88938	transcription start site region 88938	369 bp upstream
Tssr88939	transcription start site region 88939	334 bp upstream
Tssr88940	transcription start site region 88940	302 bp upstream
Tssr88941	transcription start site region 88941	13 bp upstream
Tssr88942	transcription start site region 88942	within coordinates
Tssr88943	transcription start site region 88943	6 bp downstream
Tssr88944	transcription start site region 88944	49 bp downstream
Tssr88945	transcription start site region 88945	84 bp downstream
Tssr88946	transcription start site region 88946	166 bp downstream
Tssr88947	transcription start site region 88947	194 bp downstream
Tssr88948	transcription start site region 88948	241 bp downstream
Tssr88949	transcription start site region 88949	1326 bp downstream