rs30425067 SNP Detail

Summary

• ID
  rs30425067
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:37167863 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACAAGTCAA GGGCAGGGGT AAAGGATTAG AGGAAGGAGA
  AGGCAATAGG CAGGAGGCAC AAATGCCATG TCGTGTAAAA TGCTGGAAAC CAAGAGTATC
  R
  TGTAGTACAA TTCAGTGAAA TCCCTAAGTA CAGGGTCTAG GGAGATGGCT CAGTAAGAGC
  ACTTCCTGTG CAAGCATGAG AACCGGAGTT TGAATCTCC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46406901	mCV24902584	ABI	CRAMUS_MOUSE	f	SNP	A	A					A		G
ss50674817	NES14008208	PERLEGEN	MM_PANEL2	f	SNP		A	G	A	A	A		A	G	A	G	A	A	G	A	G
ss136309817	ENSMUSSNP4636707	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A							G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30425067					SNP	A	A	G	A	A	A	A	A	G	A	G	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50674817	NES14008208	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:37167863 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21569	CpG island 21569	980 bp distal
Gm48081	predicted gene, 48081	418 bp downstream
Rr676656	regulatory region 676656	1164 bp distal
Rr676657	regulatory region 676657	1059 bp distal
Rr676658	regulatory region 676658	840 bp distal
Rr676659	regulatory region 676659	339 bp distal
Rr676660	regulatory region 676660	510 bp distal
Slc37a2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	1154 bp upstream
Tssr88821	transcription start site region 88821	1203 bp upstream
Tssr88822	transcription start site region 88822	1175 bp upstream
Tssr88823	transcription start site region 88823	1148 bp upstream
Tssr88824	transcription start site region 88824	1125 bp upstream
Tssr88825	transcription start site region 88825	1106 bp upstream
Tssr88826	transcription start site region 88826	1014 bp upstream
Tssr88827	transcription start site region 88827	932 bp upstream
Tssr88828	transcription start site region 88828	902 bp upstream
Tssr88829	transcription start site region 88829	884 bp upstream
Tssr88830	transcription start site region 88830	856 bp upstream
Tssr88831	transcription start site region 88831	823 bp upstream