rs30425217 SNP Detail

Summary

• ID
  rs30425217
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:43017832 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTTTATTCT TTAAGAGAAT GTATTCGTTC CCGGTGTCAA
  ATGCTTTTGA TGACTGCGTG CGAGCCCAGG TCCACGGGCC CCCGACAGTG TTAGGCAAAC
  Y
  TGCGCGCGCG CGCACACACA CACACACACA CACACACACA CACACAGGTT TTGGGGTGAG
  CCAATCACCT GGGGCACCTG CTGGCCTAGT CCCACAGCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46406688	mCV24039472	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss136387467	ENSMUSSNP4332103	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
ss322936916	CHEV_9_42914620	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30425217					SNP	T	T	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:43017832 () rs orientation: forward

Symbol	Name	Function Class
Arhgef12	Rho guanine nucleotide exchange factor 12	763 bp upstream
Cpgi21624	CpG island 21624	within coordinates
Rr677324	regulatory region 677324	1062 bp distal
Rr677325	regulatory region 677325	60 bp distal
Rr677326	regulatory region 677326	892 bp proximal
Rr677327	regulatory region 677327	941 bp proximal
Tssr89073	transcription start site region 89073	1992 bp upstream
Tssr89074	transcription start site region 89074	744 bp upstream
Tssr89075	transcription start site region 89075	663 bp upstream
Tssr89076	transcription start site region 89076	511 bp upstream
Tssr89077	transcription start site region 89077	441 bp upstream
Tssr89078	transcription start site region 89078	369 bp upstream
Tssr89079	transcription start site region 89079	341 bp upstream
Tssr89080	transcription start site region 89080	481 bp downstream
Tssr89081	transcription start site region 89081	565 bp downstream
Tssr89082	transcription start site region 89082	600 bp downstream