rs30425431 SNP Detail

Summary

• ID
  rs30425431
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:108684430 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGCA GATGGATCAT TGGATTTAAG
  R
  CCAGCCTGGT CTACATGGTT CCAGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46404965	mCV25034505	ABI	CRAMUS_MOUSE	f	SNP	A	G	A
ss136953265	ENSMUSSNP7247693	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss323192888	CHEV_9_108709562	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30425431					SNP	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:108684430 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22353	CpG island 22353	670 bp proximal
Ip6k2	inositol hexaphosphate kinase 2	894 bp downstream
Nckipsd	NCK interacting protein with SH3 domain	1137 bp upstream
Rr192618	regulatory region 192618	571 bp proximal
Rr205762	regulatory region 205762	570 bp proximal
Tssr87162	transcription start site region 87162	1109 bp upstream
Tssr87163	transcription start site region 87163	1125 bp upstream