rs30425885 SNP Detail

Summary

• ID
  rs30425885
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:87613336 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAACACTCT GCGGACACAA ATTAGGGATT GTAATTGAAA
  TTTGTTGCCT TGATCTGTCA GCACTTCAAG GCAGGAGAGC GGTGGGAAGA ACTTGCTCAT
  W
  AGTGTCAATA AAGCGGCGGG GGAGGGTCCT ATGGAGCTGT CCATCACCGA AACGGTTTAC
  CAATCAGGAG AATCTAACTC CGCTCAGCCC GCGCCCACT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J	LG/J	SM/J
ss46405549	mCV24942037	ABI	CRAMUS_MOUSE	f	SNP	T	A
ss136773420	ENSMUSSNP2916798	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
ss323061728	CHEV_9_87626118	CHEVERUD	SCREENING_POP	f	SNP			A	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J	LG/J	SM/J
rs30425885					SNP	T	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:87613336 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22111	CpG island 22111	within coordinates
D030062O11Rik	RIKEN cDNA D030062O11 gene	within coordinates
Gm69731	predicted gene, 69731	984 bp downstream
Rr684220	regulatory region 684220	within coordinates
Rr684221	regulatory region 684221	130 bp proximal
Rr684222	regulatory region 684222	984 bp proximal
Tbx18	T-box18	23 bp upstream
Tssr2959	transcription start site region 2959	39 bp upstream
Tssr90806	transcription start site region 90806	126 bp upstream
Tssr90807	transcription start site region 90807	111 bp upstream
Tssr90808	transcription start site region 90808	10 bp upstream
Tssr90809	transcription start site region 90809	within coordinates