rs30427018 SNP Detail

Summary

• ID
  rs30427018
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:20811613 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCAT AAAAATTTAT ATATGGCTAG
  K
  AAGTGCTGCT GGGTGGTTGG TTCAG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss46405842	mCV27566185	ABI	CRAMUS_MOUSE	f	SNP	G	T	T
ss136224762	ENSMUSSNP5916561	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		T
ss322873601	CHEV_9_20704761	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs30427018					SNP	G	T	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:20811613 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21406	CpG island 21406	1540 bp distal
Eif3g	eukaryotic translation initiation factor 3, subunit G	1727 bp upstream
Rr401258	regulatory region 401258	1208 bp upstream
Rr674623	regulatory region 674623	1204 bp distal
Rr674624	regulatory region 674624	1621 bp distal
Rr674625	regulatory region 674625	178 bp distal
Rr674626	regulatory region 674626	1206 bp proximal
Rr674627	regulatory region 674627	1339 bp proximal
Rr674628	regulatory region 674628	1716 bp proximal
Tssr2789	transcription start site region 2789	1742 bp upstream
Tssr2790	transcription start site region 2790	1731 bp upstream
Tssr88340	transcription start site region 88340	1686 bp upstream