rs30427357 SNP Detail

Summary

• ID
  rs30427357
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:103978579 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAAT CACACGCTGG CTATTAACAG
  Y
  GCAGTGCACA AGAAAAACTT GCACA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss46406040	mCV24895814	ABI	CRAMUS_MOUSE	f	SNP	T	T	T				C
ss50790561	NES14206545	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T		C	T	T	T		C	T	T		C
ss136884490	ENSMUSSNP2743205	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T
ss323163289	CHEV_9_104003710	CHEVERUD	SCREENING_POP	f	SNP												T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30427357					SNP	T	T	T	T	T	T	C	C	T	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50790561	NES14206545	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:103978579 () rs orientation: forward

Symbol	Name	Function Class
Acad11	acyl-Coenzyme A dehydrogenase family, member 11	within coordinates
Ackr4	atypical chemokine receptor 4	within coordinates
Gm47000	predicted gene, 47000	within coordinates
Rr686043	regulatory region 686043	875 bp proximal
Rr686044	regulatory region 686044	1428 bp proximal
Rr686045	regulatory region 686045	1629 bp proximal
Tssr2998	transcription start site region 2998	1198 bp downstream
Tssr91231	transcription start site region 91231	936 bp downstream
Tssr91232	transcription start site region 91232	962 bp downstream
Tssr91233	transcription start site region 91233	1048 bp downstream
Tssr91234	transcription start site region 91234	1170 bp downstream
Tssr91235	transcription start site region 91235	1621 bp downstream