rs30427479 SNP Detail

Summary

• ID
  rs30427479
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:32605394 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGATCAGTG TCCTCAAAAT GTATAAATAT CTTAACTGGA
  TCTCTGTCAG TGCTTCTCAC CCTACAGTAA GTTCCAACCA GATCCTGTTG TACACGTGGG
  R
  CTTGAGATGT ATCGAACATT TGCCATCAGA GACGTCCCCA TCACACCTTC TGATTTGGAT
  GGACACTAGC ACATTTTGAG CTTCTTCACT TCACGACAC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46406140	mCV22735197	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
ss136249637	ENSMUSSNP1437718	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30427479					SNP	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:32605394 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21544	CpG island 21544	1380 bp proximal
Ets1	E26 avian leukemia oncogene 1, 5' domain	within coordinates
Rr199954	regulatory region 199954	1594 bp distal
Rr203547	regulatory region 203547	872 bp distal
Rr206170	regulatory region 206170	1206 bp proximal
Rr401307	regulatory region 401307	1677 bp upstream
Tssr84270	transcription start site region 84270	1580 bp upstream
Tssr84271	transcription start site region 84271	1594 bp upstream
Tssr84272	transcription start site region 84272	1617 bp upstream
Tssr84273	transcription start site region 84273	1653 bp upstream
Tssr84274	transcription start site region 84274	1708 bp upstream
Tssr84275	transcription start site region 84275	1907 bp upstream