rs30427728 SNP Detail

Summary

• ID
  rs30427728
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:106770426 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGGT ATTTACAAAT ACGCTTTAAA
  S
  AATGAAAATC AGTATTTCAC AATCT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46407489	mCV22323339	ABI	CRAMUS_MOUSE	f	SNP		G					C
ss47774681	NES11262130	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	C	G	C		C	G	G	C		G
ss136941112	ENSMUSSNP5929521	ENSEMBL	ENSEMBL_Sanger	f	SNP		G					C
ss323187636	CHEV_9_106795558	CHEVERUD	SCREENING_POP	f	SNP										G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30427728					SNP	G	G	G	G	G	G	C	G	C	G	C	G	G	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47774681	NES11262130	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:106770426 () rs orientation: forward

Symbol	Name	Function Class
4930524O07Rik	RIKEN cDNA 4930524O07 gene	within coordinates
Cpgi22278	CpG island 22278	503 bp distal
Dock3	dedicator of cyto-kinesis 3	within coordinates
Manf	mesencephalic astrocyte-derived neurotrophic factor	1289 bp upstream
Rr368849	regulatory region 368849	1026 bp downstream
Rr686409	regulatory region 686409	1823 bp distal
Rr686410	regulatory region 686410	1706 bp distal
Rr686411	regulatory region 686411	1419 bp distal
Rr686412	regulatory region 686412	1251 bp distal
Rr686413	regulatory region 686413	1003 bp distal
Rr686414	regulatory region 686414	297 bp distal
Rr686415	regulatory region 686415	207 bp proximal
Tssr86943	transcription start site region 86943	1104 bp downstream
Tssr86944	transcription start site region 86944	752 bp downstream
Tssr86945	transcription start site region 86945	740 bp downstream
Tssr91353	transcription start site region 91353	1854 bp upstream
Tssr91354	transcription start site region 91354	1836 bp upstream
Tssr91355	transcription start site region 91355	1830 bp upstream
Tssr91356	transcription start site region 91356	1789 bp upstream
Tssr91357	transcription start site region 91357	1307 bp upstream
Tssr91358	transcription start site region 91358	1280 bp upstream
Tssr91359	transcription start site region 91359	1257 bp upstream