rs30428003 SNP Detail

Summary

• ID
  rs30428003
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:110789898 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAGG AGGAGTGGGA CTTTGTGGCC
  S
  AGTGCAGGAG GAAGGGCGTG CCCCA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46407424	mCV25301378	ABI	CRAMUS_MOUSE	f	SNP	C	C	C					G		C
ss47781683	NES11995293	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	G	C		G	C	G		G	C	G	G		G
ss136960557	ENSMUSSNP3569165	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							C
ss323195059	CHEV_9_110863334	CHEVERUD	SCREENING_POP	f	SNP												C					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30428003					SNP	C	C	C	C	C	G	C	G	G	C	G	C	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47781683	NES11995293	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110789898 () rs orientation: forward

Symbol	Name	Function Class
Lrrc2	leucine rich repeat containing 2	within coordinates
Rr198765	regulatory region 198765	898 bp distal
Rr198766	regulatory region 198766	903 bp proximal
Rr202611	regulatory region 202611	527 bp proximal
Tssr87447	transcription start site region 87447	353 bp downstream
Tssr87448	transcription start site region 87448	within coordinates
Tssr87449	transcription start site region 87449	13 bp upstream
Tssr87450	transcription start site region 87450	59 bp upstream
Tssr87451	transcription start site region 87451	97 bp upstream