rs30428331 SNP Detail

Summary

• ID
  rs30428331
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:56705560 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACGCC CCTTTAATCC CAGCATTCAG
  K
  AGGCAGAGGC AGGAGAAACT CTTGA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46406152	mCV25255175	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	T	G
ss136515320	ENSMUSSNP5396286	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G
ss322971057	CHEV_9_56646083	CHEVERUD	SCREENING_POP	f	SNP						G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30428331					SNP	G	G	G	T	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:56705560 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21799	CpG island 21799	846 bp distal
Gm31586	predicted gene, 31586	within coordinates
Gm47235	predicted gene, 47235	686 bp downstream
Lingo1	leucine rich repeat and Ig domain containing 1	1808 bp upstream
Rr679505	regulatory region 679505	924 bp distal
Rr679506	regulatory region 679506	1145 bp distal
Rr679507	regulatory region 679507	44 bp distal
Tssr89735	transcription start site region 89735	1957 bp upstream
Tssr89736	transcription start site region 89736	1321 bp upstream