rs30428864 SNP Detail

Summary

• ID
  rs30428864
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:99758918 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCGGCGCCTC CACCTGTAAT CCAGGACGCT CTGCGGAGCA
  GTTCTGGGTC CCTGGGGGTC GGAGCCAAGA GCTTTGAGCC GAGACCAGGA TGCTTCATGC
  K
  GGCTTCGCAG AGGTTTAGAG TCCTGATTGG CAAGCCCTTA ACACTCTTCA CTTTGGGGGC
  CCTTGCCACT AGGACTCTTC ACTTTGAGGG TTGAGTGTG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss46406727	mCV22284213	ABI	CRAMUS_MOUSE	f	SNP	T	T	G
ss136852114	ENSMUSSNP2432805	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss323137455	CHEV_9_99777284	CHEVERUD	SCREENING_POP	f	SNP				G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs30428864					SNP	T	T	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:99758918 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22205	CpG island 22205	395 bp distal
Gm16004	predicted gene 16004	within coordinates
Gm67910	predicted gene, 67910	141 bp downstream
Rr685463	regulatory region 685463	1137 bp distal
Rr685464	regulatory region 685464	706 bp distal
Rr685465	regulatory region 685465	205 bp distal
Rr685466	regulatory region 685466	918 bp proximal
Sox14	SRY (sex determining region Y)-box 14	695 bp upstream
Tssr91083	transcription start site region 91083	672 bp upstream
Tssr91084	transcription start site region 91084	653 bp upstream