rs30429784 SNP Detail

Summary

• ID
  rs30429784
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:52257378 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATATAGCT GGGAAAGATG
  TTTATTCACT CCACAAATAT TAACCAAGAA ACCATTGTGA GCCAGGCACT GTGCTGTTGG
  GGACACAAGA GTGAATAGTC AGATATGAGA TATTGAAGAA GCAGCCATAC ACATATGGAG
  TTAGCTAAAC AAATATCTAG TGTAATTCCA GTGAGGAATA AATGATCAGA AGAAAGGAAA
  Y
  GGAAAAAAGG TGTCTCTCAG GATCCTACCT CTGTGAGGGT AATCAAGGAA GCCTCTTGGA
  AGATACAACA GTAGCTTTGA AAATCCACAT TATCACCTAG GATAAAGATA CTGAGAGAAT
  TGGCTCAGTA GTCAAGAGCA CTTGTTGCTC TTGTAGAGTG CCTGGGTTCA ATTCACAGCA
  CCCATACAGG GGCTTACAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46947656	NES10941298	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30429784					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46947656	NES10941298	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:52257378 () rs orientation: forward

Symbol	Name	Function Class
DXMit159	DNA segment, Chr X, Massachusetts Institute of Technology 159	1725 bp proximal
Gm35988	predicted gene, 35988	773 bp downstream
Plac1	placental specific protein 1	Intron
Rr691351	regulatory region 691351	1811 bp distal
Rr691352	regulatory region 691352	982 bp distal