rs30429788 SNP Detail

Summary

• ID
  rs30429788
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:52257811 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCGCTTCTG ACACATGACA
  TACATATAGG CAAAACACCC TCCTGTTCCA CAGCTGCTCT CCCCACCTAG ACACTCACCA
  CAGCACTTCC TCCCACACAC AGCAGCCAAC ATGAACTCTC ATGATTCATA CCAGATTATG
  TCACTGCCCT GTCAAATGTT TCCCCATCAC ACAGAGAATA TAACACACCC CCTTCCATGG
  Y
  CACAATTCTT CCTTGTGCCC TGTTTCTTAG TAACACTTCC AAACTCGTTC CCTTTGCCTC
  TTCTGACTTT GTATCTGTGA CAAAATACCC GAGAGAAACA AGTTAATGGG AAAAAGGGTT
  GTTTCCTGCT TTGAGGTTTC AAGGCCAGCC TTTCAGAAAG CCATTCTAGT TTCCATGTTG
  CTTCTCAAAT ATGCCAGGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46947662	NES10941260	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30429788					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46947662	NES10941260	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:52257811 () rs orientation: forward

Symbol	Name	Function Class
DXMit159	DNA segment, Chr X, Massachusetts Institute of Technology 159	1292 bp proximal
Gm35988	predicted gene, 35988	1206 bp downstream
Plac1	placental specific protein 1	within coordinates
Rr691352	regulatory region 691352	1415 bp distal