rs30430829 SNP Detail

Summary

• ID
  rs30430829
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:52258736 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGACACACA CACACACACA
  CACACACACA CACACACACA CACAGACACA CACAGGCACA GAGCAGCTCC TAGAGTTTTC
  AATCTGATCT TTCCTGGTCT CACCACTTCC TCACTGATCT TATATGTTTT TGCTCTTTAT
  TAACTGTCTC TTTATAATCT AATACAAGTT CTGTGAGCTC TATGCTTTGC ACTGTTCTCC
  S
  CTGTGAAATC AGCACCCATA ATGCCCTCAG CGTCTAGGTG GAAATGGTGG ATTGGCTGAT
  GTTCCTTGGA AAGATCTGTC CTCCTTTTCC CCTCCTGCCA GTTTTTGTCC TCTTTCCAAA
  TAGTCCCCTT TCTACTTTCA TAATTTAAAG GGAAATCTAA ATTGCATATA TGAAAACCAT
  ATGCAACATT TGGCTTTCTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss46947674	NES10941220	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	G	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs30430829					SNP	C	C	C	C	C	C	G	C	C	C	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46947674	NES10941220	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:52258736 () rs orientation: forward

Symbol	Name	Function Class
DXMit159	DNA segment, Chr X, Massachusetts Institute of Technology 159	367 bp proximal
Plac1	placental specific protein 1	within coordinates