rs30431677 SNP Detail

Summary

• ID
  rs30431677
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44219009 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTTCCTCA AAAATCATTT
  TGTCTGTGTC CTATGTAAAT AAAAGTTTAG AGACAACATA AAAATAGGTC AAGTTGAGCC
  AGGTGTTCAC AGGCCTGTAA ACCCAAATCT GCTGCAGCTG TGGAGGCAGA AAGATCCTAC
  AGGCAATGTC TCGAGAAAGA GAATGTAGCT GTGGTCATGA TACCTCACTT CTATAATCCT
  K
  TGTAGGCCTG GCTGGCCTTG AACTCACAGA GCTCTGCCTG CCTCTGCCTT CCGAGTGCTG
  GGATTAAAGG CATGCACCAC TACAACTAGC TACGATTTAC TTCTTTAATG TCTACAAGTA
  TTTGCTGCAT GGATGTGGGT ACAGCATGTG TGTGCTGTGA CTGCAGAGGC CAAAAGAGGG
  CATCAGATCC TCCCTGTAAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss46407799	mCV23033166	ABI	CRAMUS_MOUSE	f	SNP	T	G	G	G
ss136393685	ENSMUSSNP792211	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs30431677					SNP	T	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44219009 () rs orientation: forward

Symbol	Name	Function Class
C2cd2l	C2 calcium-dependent domain containing 2-like	1525 bp downstream
Cpgi21648	CpG island 21648	1638 bp distal
Rr195005	regulatory region 195005	within coordinates
Rr206299	regulatory region 206299	1408 bp distal
Rr368726	regulatory region 368726	1617 bp downstream