rs30432671 SNP Detail

Summary

• ID
  rs30432671
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:6169220 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTTTTCAA ATGAACTCAG
  AAGGCATTCT CTGGAAAGGA TTCTCCTGCC TGCTCCTCAC CCTTCCCCAC CCCCCCCACC
  CCCCGCTAAA ATTGCCCCTC ATTCTATAAC TACTAGAGAG TGTTTTGAAG TGTCCTGGAG
  GCCACTGGGG GAAGTGCTGG AGTACACTGG GGGGTGGGGT CAAGTGGCTT TCTCCCTGCA
  M
  CTTAGAATCA TATCAGTAGG TGTGTGTCCT GGAGTAGTTG ACACCAGGAT GTGGGTGTCT
  CCTTCCAGGC TTTGAAAGCT GCAGGCTGTG CTCATCTTGG CATTGTGGTG GGCGGTGGAG
  TCCAATGGCC TTTACTGGAT AATGTAATTC TTATTTATTT TTTTATTTTA GTTAGGGGAG
  TAGGGATGAC ACGTTTCAAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46408015	mCV22333220	ABI	CRAMUS_MOUSE	f	SNP		C	A					A
ss50640633	NES14035634	PERLEGEN	MM_PANEL2	f	SNP	C		A	C	A	A	A		C	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30432671					SNP	C	C	A	C	A	A	A	A	C	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50640633	NES14035634	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:6169220 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21338	CpG island 21338	307 bp distal
Pdgfd	platelet-derived growth factor, D polypeptide	within coordinates
Tssr2757	transcription start site region 2757	526 bp downstream
Tssr83664	transcription start site region 83664	760 bp downstream
Tssr83665	transcription start site region 83665	732 bp downstream
Tssr83666	transcription start site region 83666	653 bp downstream
Tssr83667	transcription start site region 83667	625 bp downstream
Tssr83668	transcription start site region 83668	603 bp downstream
Tssr83669	transcription start site region 83669	549 bp downstream