rs30432979 SNP Detail

Summary

• ID
  rs30432979
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:122296361 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AAAGTGGTT CACCTTGCAG ATGCCACCCC
  TTCCTCTCTA TGCTTGTTCC AGCCTGGGCA CCTAACTAGG CAGTCCTAGG CCTCCTGAGG
  GTTTGCCTGG CTGGACAAGT TCATTCAATC CATGATGGCA GCCTTAAAAA AAAAAAAAAA
  W
  GCCACACAGA CACTTCTTGA GTCTCACGGG CCTCCAGCGG GTCTCTTGGT TTCGGACACT
  CTTCCTAGTT TTCACACCAA AAATATGAAT GGAGCTGCAG CTGTGGTGTG TGGCTCTGAG
  GGCAGAGCAG ACAGGGTCTT CTGACCCCTC                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39185077	mCV25174045	ABI	CRAMUS_MOUSE	f	SNP	T	T	A	A
ss324857820	CHEV_14_122458171	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30432979					SNP	T	T	A	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:122296361 () rs orientation: forward

Symbol	Name	Function Class
Gm63354	predicted gene, 63354	885 bp upstream
Gm63496	predicted gene, 63496	1672 bp downstream
Rr404309	regulatory region 404309	1765 bp upstream
Rr498317	regulatory region 498317	896 bp distal
Rr498318	regulatory region 498318	575 bp distal
Rr498319	regulatory region 498319	1693 bp proximal
Rr498320	regulatory region 498320	1937 bp proximal
Tssr127312	transcription start site region 127312	583 bp downstream
Tssr130315	transcription start site region 130315	866 bp upstream