rs30433323 SNP Detail

Summary

• ID
  rs30433323
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:52329864 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGCCTAGT TTTCAGCTTT
  ATAGCTTTAT TGTATTTCTA CAATGGCTCT TTATTCAGCC TGTATCCTAG CTCCATCTAC
  CTAATTCCTG TTTCCATCCC AAGTTTGTTC AAGGCTCAGT CTCAAGCCAC TGAGGTACAT
  CAACTGTGAG AGCATTCGGC TGAAGATTCA GCTCCAGCTT TCCAAGAAGC CTTCTGGAAC
  Y
  GCAGCCTTTT CTTTTTATGC CCCAAACACA CTCTACTCAG CCCCTTTGCT GCTTATTAGT
  GTTATTATTA TTATTATTAT TATTATTATT ATTATTTATT AGATAGGGTC TATGTCTGGG
  CTTGGTGGCA CAAACCTGTA ATCCAAGCAC CTGGGAGGCT GAGACAGGAG GATTGAATTC
  TATGCCAGTT TGGGCTCCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46948265	NES10938540	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30433323					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46948265	NES10938540	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:52329864 () rs orientation: forward

Symbol	Name	Function Class
Plac1	placental specific protein 1	895 bp upstream
Rr4265	regulatory region 4265	664 bp distal
Tssr163389	transcription start site region 163389	889 bp upstream
Tssr163390	transcription start site region 163390	880 bp upstream