rs30434425 SNP Detail

Summary

• ID
  rs30434425
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:98400388 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTTTTTTCC CTCCCTTGTG
  CTTCAAGTCT TGGCGAATCA ACAGTCTTTG CTTATCTCTG TAATCCAGTC TAGATAACCG
  TTCCCTTTTC CTTTCCTGTT CTCTGGTCAA AGACTGGTAA TTCCGTCTAT TGAAACCTAT
  TGTTCTATAG GGGTCCGCAA AGAGGTGACT ATTTTAACCC CATTTTAGGA AGGATTGAGT
  S
  TCGGGAAACT CGTGATTTGC ATGTCTAGCA CATCGAATTA GTTGGTGTTG AAAATAAATT
  ATCAGACCCA ATTAGAAAAT ATGGGAAAGA AACTGTAAAA AAAAAAATTG TCCAAATTAA
  GATCAGAAAA TATGAGGCAC TAGGTAGGTT TTGTGTGCGG TGGCTCCTAA GAGTGATCTT
  AAACCAGGTG AGGGAGGTGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49134053	NES12474240	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30434425					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49134053	NES12474240	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:98400388 () rs orientation: forward

Symbol	Name	Function Class
Ankra2	ankyrin repeat family A member 2	within coordinates
Cpgi5999	CpG island 5999	160 bp distal
Rr281816	regulatory region 281816	within coordinates
Tssr120794	transcription start site region 120794	703 bp downstream
Tssr120795	transcription start site region 120795	659 bp downstream
Tssr120796	transcription start site region 120796	578 bp downstream
Tssr120797	transcription start site region 120797	543 bp downstream
Tssr123622	transcription start site region 123622	860 bp upstream
Tssr123623	transcription start site region 123623	833 bp upstream
Utp15	UTP15 small subunit processome component	888 bp upstream