rs30434427 SNP Detail

Summary

• ID
  rs30434427
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:98399662 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGCTCTGCA GCACTCGCTC
  AAAATCACGC GGACAGTCCA GGAGCCGGAA ACGCGGAGGC GCAGAGGCGC GTCGCGGGAA
  GATGACGTGC AGCGCAGGCG CAGAAGGTTT ACGACCCAAA GAACTACAAG AAAGCGCCCT
  GGTGGGCGGG GCCCTGGGCG GGGCCCCGGG CCGCTCTCCA ATGACCCGGA ACTGAGGCGA
  Y
  CCATGGTTCT CCGAGAGGAT GGGCTACGGG GCGCTAGGGA AACAAGAAGC GATCCCTGGG
  AGTCGTCTCG CCTTCACCGA ACGCTCTGGG CTTTTTCCAG AGGAGATAAA AGATAGGAAG
  TGACGTCTGG GCCCGAAGCA GGCCCGGGGC TCGGGACCGA TCTGGCTAGG CCAGGCCAGA
  GCCGCTCTCC CGCTGAGCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49134055	NES12474238	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	C	T	T	T	T		T	T	C	T
ss145048353	ENSMUSSNP944057	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30434427					SNP	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49134055	NES12474238	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:98399662 () rs orientation: forward

Symbol	Name	Function Class
Ankra2	ankyrin repeat family A member 2	within coordinates
Cpgi5999	CpG island 5999	within coordinates
Rr281816	regulatory region 281816	within coordinates
Tssr120794	transcription start site region 120794	within coordinates
Tssr120795	transcription start site region 120795	33 bp upstream
Tssr120796	transcription start site region 120796	108 bp upstream
Tssr120797	transcription start site region 120797	172 bp upstream
Tssr123622	transcription start site region 123622	134 bp upstream
Tssr123623	transcription start site region 123623	107 bp upstream
Utp15	UTP15 small subunit processome component	162 bp upstream