rs30434428 SNP Detail

Summary

• ID
  rs30434428
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:98399549 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTGGGCCG CCACCGGGAG
  CCGCCATCGC CTACCTCCGC GGGGCCCCGA GGGTCCACCG AGGCACCGAT CCCCAGGACG
  ACTCCCCAGA CTTCGCCAGC TCCCTACAGC ATACCGCTCT GCAGCACTCG CTCAAAATCA
  CGCGGACAGT CCAGGAGCCG GAAACGCGGA GGCGCAGAGG CGCGTCGCGG GAAGATGACG
  Y
  GCAGCGCAGG CGCAGAAGGT TTACGACCCA AAGAACTACA AGAAAGCGCC CTGGTGGGCG
  GGGCCCTGGG CGGGGCCCCG GGCCGCTCTC CAATGACCCG GAACTGAGGC GATCCATGGT
  TCTCCGAGAG GATGGGCTAC GGGGCGCTAG GGAAACAAGA AGCGATCCCT GGGAGTCGTC
  TCGCCTTCAC CGAACGCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49134056	NES12474237	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30434428					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49134056	NES12474237	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:98399549 () rs orientation: forward

Symbol	Name	Function Class
Ankra2	ankyrin repeat family A member 2	35 bp upstream
Cpgi5999	CpG island 5999	within coordinates
Rr281816	regulatory region 281816	within coordinates
Tssr120794	transcription start site region 120794	64 bp upstream
Tssr120795	transcription start site region 120795	146 bp upstream
Tssr120796	transcription start site region 120796	221 bp upstream
Tssr120797	transcription start site region 120797	285 bp upstream
Tssr123622	transcription start site region 123622	21 bp upstream
Tssr123623	transcription start site region 123623	within coordinates
Utp15	UTP15 small subunit processome component	49 bp upstream