rs30434429 SNP Detail

Summary

• ID
  rs30434429
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:98398291 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAAGAAAA CCTAAACAGA
  GGAAACTTAA AAGTGACAGA AGAAGAAAAA AAGAAGGAGA AGAAGAATCT AAGTTCTTAA
  CACGAGAAGC ATTCAACTGA AGACAGTCGG GAGTATCAGA TGGACGATTA TATCGACGAT
  ACTCTCTGTC CACTCTGAAA AGCCTGCACA GCCGACATCA GCAGCACCAA AGCAATCAGT
  K
  TAACTTATTC TAATTGCTAT TTTGATGAAG CAGAGCAAAC CAAGGTTCAT TCACTTCACA
  CTCACTTTTG CTTTAACATA CCAGGAATGC CCTTTCACTA CGTACTTCCT ATTTAAGGTC
  AGCACAGGAA GTCATTCTGT CCCTCAGAAA TCCCTCTCTG CCTTCCAACA GGTGTTCTCA
  AACACTATCA AGGGCCAGAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49134059	NES12474290	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30434429					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49134059	NES12474290	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:98398291 () rs orientation: forward

Symbol	Name	Function Class
Ankra2	ankyrin repeat family A member 2	1293 bp upstream
Cpgi5999	CpG island 5999	893 bp proximal
Rr281816	regulatory region 281816	109 bp proximal
Tssr120794	transcription start site region 120794	1322 bp upstream
Tssr120795	transcription start site region 120795	1404 bp upstream
Tssr120796	transcription start site region 120796	1479 bp upstream
Tssr120797	transcription start site region 120797	1543 bp upstream
Tssr123622	transcription start site region 123622	1163 bp downstream
Tssr123623	transcription start site region 123623	1243 bp downstream
Utp15	UTP15 small subunit processome component	within coordinates