rs30434430 SNP Detail

Summary

• ID
  rs30434430
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:98398132 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATACAGAA CTAGAAACAC
  AACAGACTGA CCTGACTTCC TAAAAGACAA AAGAAGCAAG GAAAACAAAG TTAATCTTTA
  AGTGTAGAGG CTTAAGATGA AATTAGAGAT AATGTGCTGG CATCAGACAT AAAATTAAAC
  GTGAAAGGTT CAAACTGTAG GAAAGAAAAC CTAAACAGAG GAAACTTAAA AGTGACAGAA
  R
  AAGAAAAAAA GAAGGAGAAG AAGAATCTAA GTTCTTAACA CGAGAAGCAT TCAACTGAAG
  ACAGTCGGGA GTATCAGATG GACGATTATA TCGACGATAC TCTCTGTCCA CTCTGAAAAG
  CCTGCACAGC CGACATCAGC AGCACCAAAG CAATCAGTTT AACTTATTCT AATTGCTATT
  TTGATGAAGC AGAGCAAACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	CAST/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49134060	NES12474289	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	CAST/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30434430					SNP	G	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49134060	NES12474289	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:98398132 () rs orientation: forward

Symbol	Name	Function Class
Ankra2	ankyrin repeat family A member 2	1452 bp upstream
Cpgi5999	CpG island 5999	1052 bp proximal
Rr281816	regulatory region 281816	268 bp proximal
Tssr120794	transcription start site region 120794	1481 bp upstream
Tssr120795	transcription start site region 120795	1563 bp upstream
Tssr120796	transcription start site region 120796	1638 bp upstream
Tssr120797	transcription start site region 120797	1702 bp upstream
Tssr123622	transcription start site region 123622	1322 bp downstream
Tssr123623	transcription start site region 123623	1402 bp downstream
Utp15	UTP15 small subunit processome component	within coordinates