rs30434431 SNP Detail

Summary

• ID
  rs30434431
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:98397878 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACATTTACA TACACACACA
  CACACACACA CACACATATA TAATATATAC ATACACACAC ATATATATAT AATACATACA
  TACACACACA CACACACACA CACACACACA CACACACATA TATGCTGCAT ATGTATGTCC
  TTAAACCTCC CAGAGCAGGC GGCAATGCTT GAGAGTAAAT AAGACTTAGC CTTCCAGTAG
  Y
  TGAAACCAGA AAAGCATGCA GGGCTGGAAC ATTCACTTTC TTGTCAAAGG AAAGAATACA
  GAACTAGAAA CACAACAGAC TGACCTGACT TCCTAAAAGA CAAAAGAAGC AAGGAAAACA
  AAGTTAATCT TTAAGTGTAG AGGCTTAAGA TGAAATTAGA GATAATGTGC TGGCATCAGA
  CATAAAATTA AACGTGAAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49134061	NES12474288	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30434431					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49134061	NES12474288	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:98397878 () rs orientation: forward

Symbol	Name	Function Class
Ankra2	ankyrin repeat family A member 2	1706 bp upstream
Cpgi5999	CpG island 5999	1306 bp proximal
Rr281816	regulatory region 281816	522 bp proximal
Tssr120794	transcription start site region 120794	1735 bp upstream
Tssr120795	transcription start site region 120795	1817 bp upstream
Tssr120796	transcription start site region 120796	1892 bp upstream
Tssr120797	transcription start site region 120797	1956 bp upstream
Tssr123622	transcription start site region 123622	1576 bp downstream
Tssr123623	transcription start site region 123623	1656 bp downstream
Utp15	UTP15 small subunit processome component	within coordinates