rs30435334 SNP Detail

Summary

• ID
  rs30435334
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:42174618 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCTC TCATCCGGCC TTTACACATC
  W
  GGAGGAGTGA TGGAGAGATT CTCCC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss46408341	mCV23263560	ABI	CRAMUS_MOUSE	f	SNP	A	A					T	A
ss52006409	NES15025804	PERLEGEN	MM_PANEL2	f	SNP		A	A	A	A	A		A	A	A		T		A	T	T
ss136379325	ENSMUSSNP6656672	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						A					T
ss322933976	CHEV_9_42071405	CHEVERUD	SCREENING_POP	f	SNP											A						A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs30435334					SNP	A	A	A	A	A	A	T	A	A	A	A	T	T	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52006409	NES15025804	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:42174618 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21617	CpG island 21617	332 bp proximal
Gm10690	predicted gene 10690	1036 bp upstream
Rr368719	regulatory region 368719	1181 bp upstream
Rr401326	regulatory region 401326	871 bp upstream
Rr677189	regulatory region 677189	273 bp proximal
Rr677190	regulatory region 677190	868 bp proximal
Rr677191	regulatory region 677191	1148 bp proximal
Sc5d	sterol-C5-desaturase	within coordinates
Tssr84545	transcription start site region 84545	1149 bp upstream
Tssr89017	transcription start site region 89017	1181 bp upstream
Tssr89018	transcription start site region 89018	882 bp downstream
Tssr89019	transcription start site region 89019	904 bp downstream