rs30436500 SNP Detail

Summary

• ID
  rs30436500
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:106698614 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCTC CGTGATTAGT TGTTTTCACC
  R
  AAGGGCTTTC ATTTTTCTGC CTCAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss46408623	mCV25234273	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
ss136940625	ENSMUSSNP5704530	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss323187385	CHEV_9_106723746	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs30436500					SNP	G	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:106698614 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22276	CpG island 22276	150 bp proximal
Dcaf1	DDB1 and CUL4 associated factor 1	459 bp upstream
Rr368848	regulatory region 368848	192 bp upstream
Rr401655	regulatory region 401655	1031 bp upstream
Rr686399	regulatory region 686399	1908 bp distal
Rr686401	regulatory region 686401	1543 bp distal
Rr686402	regulatory region 686402	within coordinates
Rr686403	regulatory region 686403	470 bp proximal
Tssr86935	transcription start site region 86935	479 bp upstream
Tssr86936	transcription start site region 86936	584 bp upstream
Tssr86937	transcription start site region 86937	608 bp upstream