rs30436799 SNP Detail

Summary

• ID
  rs30436799
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:78524527 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGGTAAG AGAAACTGCA
  CTGTCTAACA GTCACACTTG GAATATGGTA ATAGAGCCCT GGGCTAGGCA ACACAACAGA
  GGAGCACAAA CAAGTTTGCA GTGATTTCCA CAGTGCCCCT TTGCAAATTA GCCGTGACTT
  CCACAGGTGC CTGTTTGATT CTAACACCTG TGAAGTCTGA AATTGTCCCC GAGTGTTCCA
  M
  CAAGTGGACA AAGAGCCAGA TTCCTTCCGT GTGTGGCTGC ATCGAATCAG ACTGCAGGGG
  AAGAACATCC GGAGTTTCCT ACGTGGGAGG TGTTTGTGGG CCTGGCCTGG AAACTCTGCT
  TGCCACCATT GCTCATATAC AGATGGCCAG GAGGGTGGGA AATGCAGGCC AGTGTCTACC
  CAGAGAATGG GCAGAGATAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46408690	mCV22794984	ABI	CRAMUS_MOUSE	f	SNP	C	C	A	A	A
ss136669104	ENSMUSSNP1936920	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30436799					SNP	C	C	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:78524527 () rs orientation: forward

Symbol	Name	Function Class
Cd109	CD109 antigen	Intron
Cpgi22073	CpG island 22073	1161 bp distal
Gm69315	predicted gene, 69315	1588 bp upstream
Rr683598	regulatory region 683598	1689 bp distal
Rr683599	regulatory region 683599	1098 bp distal
Tssr86295	transcription start site region 86295	1771 bp downstream
Tssr86296	transcription start site region 86296	1752 bp downstream
Tssr86297	transcription start site region 86297	1736 bp downstream
Tssr86298	transcription start site region 86298	1502 bp downstream
Tssr86299	transcription start site region 86299	1459 bp downstream
Tssr86300	transcription start site region 86300	1436 bp downstream
Tssr86301	transcription start site region 86301	1413 bp downstream
Tssr86302	transcription start site region 86302	1364 bp downstream
Tssr90659	transcription start site region 90659	1588 bp upstream