rs30436841 SNP Detail

Summary

• ID
  rs30436841
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:53882652 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGCAAGGC AACAGCTGTC
  ATTTCCTCTG CTAAGAACTA GAGCTAGATC CAAAGCCAGT CCAGTTGGGG AAGGAGATGC
  TAGCTGAACG AAGGGGGACC AGAGCCCCTT CTCCTTCCCC ATCTCTTCCT CCGGAGTTCC
  ATTTCTGCAT TACCTTTGCA CGTTTCAAGT TGCTGCGATG TTTACCTTCT TGTCTGTTAT
  Y
  CTGAATGTGA GCTGGAGCAG GGAGGGCGTG TCTGGCTTCT GTGCACATCC CCCACCATCG
  CCAGGGCCAG GTGCAAATGC TTGAGAGACG TGTGTTAAAT CAAGTGGAAA GCATTCTGAG
  AAATAGAGAC GCATCCAAAT GTGGCTGGAT GTGTTTACAG GGGCTGTACC CAGTTCCTGG
  AGACCATCAC ACAGGCTGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46949074	NES10808448	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30436841					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46949074	NES10808448	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:53882652 () rs orientation: forward

Symbol	Name	Function Class
Gm64314	predicted gene, 64314	within coordinates
Rr397671	regulatory region 397671	within coordinates
Rr576760	regulatory region 576760	within coordinates