rs30437217 SNP Detail

Summary

• ID
  rs30437217
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:107429601 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCAA ACAGAACCAC GCAGGACAAT
  W
  TATACCTTCC AGTCTCCTCG CGCCT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss46407865	mCV24366235	ABI	CRAMUS_MOUSE	f	SNP	T	T	T					A	A
ss47777553	NES11986103	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T		A	T		A	T	T		T
ss136948290	ENSMUSSNP3584554	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						A
ss323191586	CHEV_9_107454733	CHEVERUD	SCREENING_POP	f	SNP											T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30437217					SNP	T	T	T	T	T	T	T	A	A	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47777553	NES11986103	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:107429601 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22292	CpG island 22292	352 bp distal
Cpgi22293	CpG island 22293	1476 bp proximal
Gm34106	predicted gene, 34106	1565 bp upstream
Gm68605	predicted gene, 68605	1108 bp downstream
Rassf1	Ras association (RalGDS/AF-6) domain family member 1	within coordinates
Rr368855	regulatory region 368855	1149 bp downstream
Tssr86984	transcription start site region 86984	1604 bp downstream
Tssr86985	transcription start site region 86985	962 bp downstream
Tssr86986	transcription start site region 86986	827 bp downstream
Tssr91394	transcription start site region 91394	1565 bp upstream
Tssr91395	transcription start site region 91395	1991 bp downstream
Zmynd10	zinc finger, MYND domain containing 10	1083 bp downstream