rs30437379 SNP Detail

Summary

• ID
  rs30437379
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:124195198 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ATAAAAAATG GAAAAAAAAA AAAAATCCTT GGCCCGGGCG CAGGCTGATG GCATCAGCAA
  GTCAGGTCGC CGCGTGGAGG CCGTGCGCGC ATGCGCAGTG ACTTCCCCCG GCCACGGGCT
  CGCATGCGCT GGGGGTGTGC GCCGGCTTGG GGTCCCGATG CGTATGCGCG TTGGGTTTCT
  GTTGCAGGCA GCGCACATGC GCATTGCGTT TACTTCCAAG TTGGCTGCAC ATGCGTGTCG
  CAGAAGTGCG GGTCTGGCGA GTACAAAGAA GCCTGGCTTC GCGCATGCGT ATCGTGACGT
  R
  TGACAGCGAG TATGGCCTGG TGCCATCAGT CATCCTGGAA GCTCCGCTCA CTTTTAAAAA
  ATAATCTCAT TGGTGCCTAA TTGTCATTTA TTTACTTATC ATTTGCATAT TCATGAATCT
  CGTTTACATA TTCTCAAGGT GCATTTGTTT ATCGCCCCCC AAGCTGGATT GGAAGATGAC
  GTCACCCTGT TGTTACCCAC CGAGTGACGC CTGGATGCTC CTCAGGCTCC GCCCCTTTTG
  GTCAGGAATT GATGTCTTGA AACATTGGCA TAGCATTTGC ATTTCATTTG AATATTCATT
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss46408231	mCV24427024	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss134041034	ENSMUSSNP3593461	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs30437379					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:124195198 () rs orientation: forward

Symbol	Name	Function Class
4930526I15Rik	RIKEN cDNA 4930526I15 gene	within coordinates
Ppp2r3d	protein phosphatase 2 (formerly 2A), regulatory subunit B'', delta	214 bp upstream
Rr689518	regulatory region 689518	1277 bp distal
Rr689519	regulatory region 689519	within coordinates
Rr689520	regulatory region 689520	592 bp proximal
Rr689521	regulatory region 689521	708 bp proximal
Rr689522	regulatory region 689522	1609 bp proximal
Tssr3091	transcription start site region 3091	1521 bp downstream
Tssr3092	transcription start site region 3092	1493 bp downstream
Tssr3093	transcription start site region 3093	1473 bp downstream
Tssr3094	transcription start site region 3094	1421 bp upstream
Tssr3095	transcription start site region 3095	1220 bp upstream
Tssr3096	transcription start site region 3096	1140 bp upstream
Tssr3097	transcription start site region 3097	1064 bp upstream
Tssr3098	transcription start site region 3098	713 bp upstream
Tssr3099	transcription start site region 3099	610 bp upstream
Tssr3100	transcription start site region 3100	585 bp upstream
Tssr3101	transcription start site region 3101	473 bp upstream
Tssr3102	transcription start site region 3102	330 bp upstream
Tssr3103	transcription start site region 3103	288 bp upstream
Tssr3104	transcription start site region 3104	196 bp upstream
Tssr3105	transcription start site region 3105	86 bp upstream