rs30437980 SNP Detail

Summary

• ID
  rs30437980
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:70314153 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCAG CACATCTGCA TGGGCTCAGT
  R
  AACTTGGTAA ATGGGCTTCT GGCAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46407773	mCV23564254	ABI	CRAMUS_MOUSE	f	SNP		G	G					A		G
ss52027692	NES15045281	PERLEGEN	MM_PANEL2	f	SNP	G		G	A	G	G	G		G	G	G	G		G	G	A	G		G
ss136607535	ENSMUSSNP2642535	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G							G
ss322999743	CHEV_9_70254678	CHEVERUD	SCREENING_POP	f	SNP													A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30437980					SNP	G	G	G	A	G	G	G	A	G	G	G	G	A	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52027692	NES15045281	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:70314153 () rs orientation: forward

Symbol	Name	Function Class
Ccnb2	cyclin B2	821 bp downstream
Gm69197	predicted gene, 69197	1813 bp downstream
Mir5626	microRNA 5626	1118 bp upstream
Rr197017	regulatory region 197017	1848 bp proximal
Rr204787	regulatory region 204787	562 bp proximal
Rr204788	regulatory region 204788	1847 bp proximal