rs30438024 SNP Detail

Summary

• ID
  rs30438024
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:52362086 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGAGCAAT AGCAATAGTT
  TATAATGTTT GATATTTCAT TTATGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTTTTCAC
  GTGGTGAGTA GGCCAGAGAT ATCTGTTCCC TCAGGGCTGA CCTTACAGAT AGTTGTGACC
  AGCCTGATGT GAGTGTTGGG AACTGAAGTT GGAGCAGTAC ATGCTTAATG GTAGTCCCCA
  Y
  GTCCTATTTT ATTCATACCA TCAGTGTATA CCTAGTTTTT GTTGCCTTTA ATATCAATCT
  TTTAAGAGGA ATGGGCTATT TGTGGTTTGT GACCAGGTAT TTACTTCTTG TTGGCTTACT
  CTTGTGGGAA CTAAAGGTTG AAGTGTTACT TTAAGGTTGC TATGGGAACC CAGCAAATAG
  AGAGCTGATT ATGACACTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46948505	NES10937531	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30438024					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46948505	NES10937531	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:52362086 () rs orientation: forward

Symbol	Name	Function Class
Pabir3	PABIR family member 3	215 bp upstream
Tssr160962	transcription start site region 160962	209 bp upstream
Tssr160963	transcription start site region 160963	236 bp upstream