rs30438225 SNP Detail

Summary

• ID
  rs30438225
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40713990 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTATG TTTAATTCAC ACATTCTGAT
  Y
  GGGAATTTGC CAACCAAACA ATTGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	C57BL/6J	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss46408537	mCV23403491	ABI	CRAMUS_MOUSE	f	SNP	T		C	T
ss52005326	NES15019000	PERLEGEN	MM_PANEL2	f	SNP	T	T				C	C
ss136338434	ENSMUSSNP5688263	ENSEMBL	ENSEMBL_Sanger	f	SNP	T			T
ss322919709	CHEV_9_40610777	CHEVERUD	SCREENING_POP	f	SNP					T			T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	C57BL/6J	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs30438225					SNP	T	T	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52005326	NES15019000	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40713990 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21603	CpG island 21603	803 bp distal
Gm57042	predicted gene, 57042	1649 bp upstream
Hspa8	heat shock protein 8	within coordinates
Rr206240	regulatory region 206240	within coordinates
Rr383256	regulatory region 383256	1145 bp downstream
Snord14c	small nucleolar RNA, C/D box 14C	889 bp upstream
Snord14d	small nucleolar RNA, C/D box 14D	1301 bp upstream
Tssr84481	transcription start site region 84481	1410 bp downstream
Tssr84482	transcription start site region 84482	781 bp downstream
Tssr84483	transcription start site region 84483	325 bp downstream
Tssr84484	transcription start site region 84484	38 bp downstream
Tssr84485	transcription start site region 84485	1530 bp upstream
Tssr88972	transcription start site region 88972	1908 bp upstream