rs30439100 SNP Detail

Summary

• ID
  rs30439100
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:52364190 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAGAATAT TAATATATGA
  CATGAAAATT AAGATGGAGG CAGGAACTTT TGTTAATGTG TGTACTCCAT AGTCTTTGGT
  TTTATCTTAA CCCTTTCTTC TGCCTTTAAG CACCACCCTT TTCCTGTATT CTCTCATTAC
  TCAACTTTAA TAACCATTTT TTTATAAAAA CTTTCCAAAT ACTCAGGGAA TTTTCACAAT
  R
  CCTTTCAGAT CATGAGTGGT AAACTGGATT TTACTGGTAT CAAGTTATGT ATCATTAATC
  TTTTGGAATC TGTATGAACT GTAAAAAGTA GTAGCGTATA TATTTCTCAA GACAACTATG
  AAGTATAGAT TATTTAAATT TGTGTGTATT TATATAGCAG TTTAAATATG TATTGAGTGT
  TTATTAGTAT AGAAATCGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46948523	NES10937483	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30439100					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46948523	NES10937483	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:52364190 () rs orientation: forward

Symbol	Name	Function Class
Pabir3	PABIR family member 3	within coordinates
Tssr160962	transcription start site region 160962	1884 bp downstream
Tssr160963	transcription start site region 160963	1858 bp downstream