rs30440459 SNP Detail

Summary

• ID
  rs30440459
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:104259058 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGGTTTTC AACCTTAAGA
  GCTTACCAGT TCAGAATTTT GGGGCTTATG AGTCTGGGCC TGGCTTCTGT TGCCTGAAGC
  CATTCTCTGC CATGGAGACA TAAATAGTCC CCACAAGGAC CAAATGGACA GCAAGGGGTG
  GTGCTTCCTT GCTGTCAGTC ATTTGCTGGC TTCACAGTGG TATCCACCAG CTGCACCTCC
  W
  GTGACTGTCT CAGGCAATTG AAGTCTCCTC TCAACTGGAG CACCTGGACT TCCCTGAGAC
  ACTGCTGCAC AGTCCAGCAC TTGCTCACTG AGTCATCTGC TCACAAGCAG TGTCCAAGTA
  CATAGCAGCC ACCTTTGCTC TAAAGCAGAG GATTCCCTTA AACAAGCAAC ACTTGTGAAA
  TACACTTGGC TTCCGTTCCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47948429	NES12017512	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30440459					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47948429	NES12017512	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:104259058 () rs orientation: forward

Symbol	Name	Function Class
Tssr95610	transcription start site region 95610	627 bp downstream