rs30441558 SNP Detail

Summary

• ID
  rs30441558
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:98069275 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAAGTCAT TGTTTACTGG
  GTGTCTAACA GGAGGCAGCT ACGGTTAAGG AAAAAGAGAT ACTCTATATA CCAGCAGACA
  GGACTCAACA TTAACAAAGC ATTTTGAGCC ATAGTATCTG ACTGTGAAGA ACTTAGCAAC
  ATCACAGGAA AGAATGACCA GGATCTGAAA AGATGCCATA AACCAAAACA ACAATAAACC
  M
  GCAGTGAAGA CTCTTGGAAG CTTTTAATTT TGAAAGTTCC CATTTAAAGT GCAGTCACGT
  ACAGAAGGAA CTGATTACAG AGAGACACAC ACCGGTATGA ACATATAGCT TGACTCTGAA
  CGAGAAGTCA TTGACATCCT AAGGATAAAC TCAAATTTTT GCTTCCTAAG ACATTTTCAA
  ATTGCCCATG TAACACGCAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49135475	NES12455715	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30441558					SNP	A	A	A	A	A	A	A	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49135475	NES12455715	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:98069275 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Arhgef28	Rho guanine nucleotide exchange factor 28			Intron
				Noncoding-Transcript-Variant
Cpgi5995	CpG island 5995			1610 bp distal